vdjtools-doc.readthedocs.io - VDJtools: a framework for post-analysis of repertoire sequencing data — vdjtools SNAPSHOT documentation

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VDJtools is an open-source Java/Groovy-based framework designed to facilitate analysis of immune repertoire sequencing ( RepSeq ) data. VDJtools computes a wide set of statistics and is able to perform various forms of cross-sample analysis. Both comprehensive tabular output and publication-ready plots are provided.

For the period of VDJtools development, there were no other software tools able to perform a comprehensive RepSeq post-analysis. Therefore most of the analysis of this kind was done using in-house scripts, which definitely leads to “re-inventing the bicycle” problem and loss of analysis reproducibility.

The main aims of the VDJtools Project are:

Links to vdjtools-doc.readthedocs.io (2)

• immunedb.readthedocs.io ImmuneDB — ImmuneDB 1.5.0 documentation
• immunedb.com ImmuneDB — ImmuneDB 1.5.0 documentation